Links within this page: Ian Lawson Van Toch Memorial Award for Outstanding Student Paper | RCSB PDB Poster Prize | Special Session: Representation learning in biology | Special Session: Emerging gain-of-function mutations and multi-omics network biology | Bio-Ontologies COSI – Best Talk Award | Bio-Ontologies COSI – Best Poster Award | BioVis COSI – Best Abstract | BioVis COSI – Test-of-Time Award | CAMDA COSI – Best Talk Awards | CAMDA COSI – Best Poster Award | CompMS COSI – Best Talk Award | CompMS COSI – Best Poster Award | EvolCompGen COSI - Best Talk Award | EvolCompGen COSI - Best Poster Award | iRNA COSI – Best Poster Award | NetBio COSI – Best Talk Award | NetBio COSI – Best Poster Award | SysMod COSI - Best Poster Awards | TransMed COSI Best Oral Presentation Awards | TransMed COSI Best Poster Awards
Jamshed Khan, University of Meryland
Cuttlefish: Fast, parallel, and low-memory compaction of de Bruijn graphs from large-scale genome collections
With Support From:
Tsukasa Nakamura, JSPS(PD)/Tohoku University
Towards protein interface prediction using SE(3)-Transformer
First Prize
Hideki Yamaguchi, The University of Tokyo
Evotuning protocols for Transformer-based variant effect prediction on multi-domain proteins
Second Prize
Paulina Szymczak, Uniwersytet Warszawski
HydrAMP: a deep generative model for antimicrobial peptide discovery
Most Innovative Talk
Trey Ideket, University of California, San Diego
Building the Mind of Cancer
Most Provocatice Talk
Christopher Burge, MIT
Hunting for functional genetic variants in human 3' UTR
Tiago Lubiana, University of Sao Paulo
Wikidata for 5-star Linked Open Databases: a case study of PanglaoDB
Sanya Taneja, University of Pittsburgh
Designing potential extensions from G-SRS to ChEBI to identify natural product-drug interactions
First Prize
Grammer-Based Interactive Visualization of Genomics Data
Sehi L'Yi, Qianwen Wang, Fritz Lekschas, and Nils Gehlenborg
Honourable Mention
Loon: Using Exemplars to Visualize Large Scale Microscopy Data
Devin Lange, Eddie Polacno, Robert Judson-Torres, Thomas Zangle, and Alexander Lex
RuleBender: Integrated visualization for biochemical rule-based modeling
Adam M Smith, Wen Xu, Yao Sun, James R Faeder, G. Elisabeta Marai
First Prize
Gonghua Li, Chinese Academy of Sciences & Massachusetts Gneral Hospital
Targeting the hsot response in COVID-19 by integeration of metabolic modeling and cheminformatics
Second Place
Xianghao Zhan, Stanford University
Filter Drug-induced Liver Injury (DILI) Literature with Natural Langauage Processing and Ensemble Learning
Third Place
Dimatar Vassilev, Sofia University
Discovering relationship between bacteriophages and antimicrobial resistance
Proteomics
Ayse Dincer
Inferring peptide coefficients from quantitative mass spectrometery data
Proteomics
Sven Giese
millipede - A Deep Learning Library to Predict the Entire Mass Spectrometery Life Cycle of Proteins and Peptide
First Prize
Elise Parey
Combining synteny and sequence-based approaches to investigate genome evolution after polyploidization
Honourable Mentions
Day 1: Salvatore Cosentino
SonicParanoid2: Machine Learning-Driven Integration of Bidirectional Best Hit and Protein Domain Analysis for Faster and More Accurate Othology
Day 2: Conor Walker
Accurate detection of interspecific positive selection using convolutional neural networks
Day 3: Matteo Delabre
Super-Reconciliation with Horizontal Gene Transfers
First Prize
Vignesh Sridhar, Karn Jongnarangsin, Arjun Krishnan, and Janani Ravi
Developing a machine learning approach to determine gene/protein features to classify bacterial groups
Honourable Mention
Elliot Majlessi, Neal Hammer, and Janani Ravi
Evolution of Staphylococcal Antibiotic Resistance Systems Across Gram-Positive Bacteria
David Wang, University of Pennsylvania
Alternative Splicing Based Classification of Heterogeneous Cancers Reveals Novel Disease Subtypes
Olga Lazareva, Technical University of Munich
On the limits of active module identification
Lisa Rottjers, KU Leuven
Fast and flexible analysis of linked microbiome data with mako
First Prize
Automated whole-cell modeling from genomic sequence and multi-omics data
Kazunari Kaizu, Kozo Nishida, and Koichi Takashi
An agent-based model of tumour-associated macrophage differentiation in chronic lymphocytic leukaemia
Nina Verstraete, Malvina Marku, Helene Arduin, Marcin Domagal, Jean Jacques Fournie, Loic Ysebaert, Mary Poupot, and Vera Pancaldi
Second Prize
Boolean Network Inference at Different Levels of Logical Complexity
Eline S. van Mantgem, Gunnar W. Klau, and Heinrich Heine
Third Prize
Simulating drug effects on whole-cell level simulation
Bence Keomley-Horvath, Attila Czikasz-Nagy, Istvan Reguly, and Pazmany Peter
Marius Herr, University Hospital Tubingen & University of Tubingen
Bringing the algorithms to the Data - Secure Distributed Medical Analytics using the Personal Health Train
Riya Gupta, Khatri Labs, Stanford University
Formulating a Gene Signature for Diagnosis of Autoimmune and Infectious Diseases
Yun Hao, University of Pannsylvania
A novel feature selection pipeline for identifying predictive targets associated with drug toxicity
Juan Jenao, Institute of Computational Biology, Biology Helmholtz-Zentrum Munchen
Identifying Dysfunctional Mechanisms of Pancreas-residing T-cells in Islet Autoimmunity Through Single cell Immune Profiling
Mark Wappett, Queens University
SynLeGG; analysis and visualization of multiomics data for discovery of cancer 'Achilles Heels' and gene function relationships
Hammad Iqbal, Precision Medicine Lab
The wearables for wellness pilot: data-enabled primary care in an LMIC context